Routines for writing TIFF images

Functions
void	IPGZ::writeFloat2Tiff2D (char *outFilename, PixelArray2D< float > *data, int R, int G, int B, int compress)
	Routine to write floating point information stored in the PixelArray2D class to a TIFF file.
void	IPGZ::writeFloat2Tiff2D (char *outFilename, PixelArray2D< float > *data1, int R1, int G1, int B1, PixelArray2D< float > *data2, int R2, int G2, int B2, int compress)
	Routine to merge floating point information stored in two instances of the PixelArray2D class and write to a TIFF file.
void	IPGZ::writeOverlay2Tiff (char *inFilename, char *outFilename, PixelArray2D< bool > *data, int R, int G, int B, int compress, int outputStyle)
	Routine to read in a TIFF file and selectively overwrite certain information corresponding to particle positions and then write to a tiff file.
void	IPGZ::writeOverlay2Tiff3D (char *inFilenamePattern, int min, int max, char *outFilenamePattern, PixelArray3D< bool > *data, int R, int G, int B, int compress, int outputStyle)
	Routine to read in a series of TIFF images and selectively overwrite certain information corresponding to particle positions and then write out corresponding tiff file.
void	IPGZ::writeIntensity2Tiff (char *outFilename, PixelArray2D< bool > *data, int R, int G, int B, int compress, int outputStyle)
	Routine to write a TIFF file using intensity data to selectively overwrite certain pixels.

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Function Documentation

void IPGZ::writeFloat2Tiff2D	(	char *	outFilename,
		PixelArray2D< float > *	data1,
		int	R1,
		int	G1,
		int	B1,
		PixelArray2D< float > *	data2,
		int	R2,
		int	G2,
		int	B2,
		int	compress
	)

Routine to merge floating point information stored in two instances of the PixelArray2D class and write to a TIFF file.

Parameters:

	outFilename	Correpsonds to the name of the TIFF file to write to disk.
	data1	The instance ofthe PixelArray2D class that stores the first set of intensity data.
	R1	Corresponds to the how much the red channel expresses the intensity information saved in data1. This number should range from 0 to 255.
	G1	Corresponds to the how much the green channel expresses the intensity information saved in data1. This number should range from 0 to 255.
	B1	Corresponds to the how much the blue channel expresses the intensity information saved in data1. This number should range from 0 to 255.
	data2	The instance ofthe PixelArray2D class that stores the second set of intensity data.
	R2	Corresponds to the how much the red channel expresses the intensity information saved in data2. This number should range from 0 to 255.
	G2	Corresponds to the how much the green channel expresses the intensity information saved in data2. This number should range from 0 to 255.
	B2	Corresponds to the how much the blue channel expresses the intensity information saved in data2. This number should range from 0 to 255.
	compress	Toggles the application of compression to the resulting tiff file. The available options are IP_NONE and IP_COMPRESS (no compression, apply compression respectively).

void IPGZ::writeFloat2Tiff2D	(	char *	outFilename,
		PixelArray2D< float > *	data,
		int	R,
		int	G,
		int	B,
		int	compress
	)

Routine to write floating point information stored in the PixelArray2D class to a TIFF file.

Parameters:

	outFilename	Correpsonds to the name of the TIFF file to write to disk.
	data	The instance ofthe PixelArray2D class that stores the intensity data.
	R	Corresponds to the how much the red channel expresses the intensity information saved in data. This number should range from 0 to 255.
	G	Corresponds to the how much the green channel expresses the intensity information saved in data. This number should range from 0 to 255.
	B	Corresponds to the how much the blue channel expresses the intensity information saved in data. This number should range from 0 to 255.
	compress	Toggles the application of compression to the resulting tiff file. The available options are IP_NONE and IP_COMPRESS (no compression, apply compression respectively).

void IPGZ::writeIntensity2Tiff	(	char *	outFilename,
		PixelArray2D< bool > *	data,
		int	R,
		int	G,
		int	B,
		int	compress,
		int	outputStyle
	)

Routine to write a TIFF file using intensity data to selectively overwrite certain pixels.

Parameters:

	outFilename	Corresponds to the name of the TIFF file to write to disk.
	data	The instance of the PixelArray2D class that stores the boolean information that tells the routine whether to overwrite a specific pixel.
	R	Corresponds to the how much the red channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	G	Corresponds to the how much the green channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	B	Corresponds to the how much the blue channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	compress	Toggles the application of compression to the resulting tiff file. The available options are IP_NONE and IP_COMPRESS (no compression, apply compression respectively).
	outputStyle	Toggles how the overlay is written. Options are IP_DOT and IP_PLUS corresponding to the individual pixel being overwritten or a plus sign being drawn.

void IPGZ::writeOverlay2Tiff	(	char *	inFilename,
		char *	outFilename,
		PixelArray2D< bool > *	data,
		int	R,
		int	G,
		int	B,
		int	compress,
		int	outputStyle
	)

Routine to read in a TIFF file and selectively overwrite certain information corresponding to particle positions and then write to a tiff file.

Parameters:

	inFilename	Corresponds to the name of the original TIFF file.
	outFilename	Corresponds to the name of the TIFF file to write to disk.
	data	The instance of the PixelArray2D class that stores the boolean information that tells the routine whether to overwrite a specific pixel.
	R	Corresponds to the how much the red channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	G	Corresponds to the how much the green channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	B	Corresponds to the how much the blue channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	compress	Toggles the application of compression to the resulting tiff file. The available options are IP_NONE and IP_COMPRESS (no compression, apply compression respectively).
	outputStyle	Toggles how the overlay is written. Options are IP_DOT and IP_PLUS corresponding to the individual pixel being overwritten or a plus sign being drawn.

void IPGZ::writeOverlay2Tiff3D	(	char *	inFilenamePattern,
		int	min,
		int	max,
		char *	outFilenamePattern,
		PixelArray3D< bool > *	data,
		int	R,
		int	G,
		int	B,
		int	compress,
		int	outputStyle
	)

Routine to read in a series of TIFF images and selectively overwrite certain information corresponding to particle positions and then write out corresponding tiff file.

Parameters:

	inFilenamePattern	General pattern of the filenames that will be read into the array. This must contain a C-style format specifier for an integer (%d). For example, "stack_%d.tiff" for filenames {"stack_1.tiff", "stack_2.tiff", etc), or stack_%.3d.tiff for filenames {"stack_001.tiff", "stack_002.tiff"}. Note the overall range must match the data stored in PixelArray3D.
	min	Corresponds to the number to start with for substitution into the filenamePattern.
	max	Corresponds to the number to end with for substitution into the filenamePattern.
	outFilenamePattern	General pattern of the filenames that will be written out. This must contain a C-style format specifier for an integer (%d). For example, "overlay_%d.tiff" for filenames {"overlay_1.tiff", "overlay_2.tiff", etc), or overlay_%.3d.tiff for filenames {"overlay_001.tiff", "overlay_002.tiff"}.
	data	The instance of the PixelArray3D class that stores the boolean information that tells the routine whether to overwrite a specific pixel.
	R	Corresponds to the how much the red channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	G	Corresponds to the how much the green channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	B	Corresponds to the how much the blue channel is expressed at each overwritten pixel. This number should range from 0 to 255.
	compress	Toggles the application of compression to the resulting tiff file. The available options are IP_NONE and IP_COMPRESS (no compression, apply compression respectively).
	outputStyle	Toggles how the overlay is written. Options are IP_DOT and IP_PLUS corresponding to the individual pixel being overwritten or a plus sign being drawn.

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