| AddInteraction(const int, const int, Potential *) | glotzmd::Simulation | |
| AddParticle(Particle *) | glotzmd::Simulation | |
| AddSimulationModifier(SimulationModifier *) | glotzmd::Simulation | |
| ANGLE enum value | glotzlammps::Simulation | [private] |
| ATOMIC enum value | glotzlammps::Simulation | [private] |
| BACKWARD enum value | glotzmd::Simulation | [protected] |
| BaseObject() | glotzmd::BaseObject | |
| BOND enum value | glotzlammps::Simulation | [private] |
| CHARGE enum value | glotzlammps::Simulation | [private] |
| CheckForErrors() | glotzmd::Simulation | [protected] |
| Clear() | glotzlammps::Simulation | |
| Clone() | glotzlammps::Simulation | [virtual] |
| ComputeAngularKineticEnergy() | glotzmd::Simulation | [virtual] |
| ComputeDegreesOfFreedom() | glotzmd::Simulation | [virtual] |
| ComputeKineticEnergy() | glotzlammps::Simulation | [virtual] |
| ComputeLinearKineticEnergy() | glotzmd::Simulation | [virtual] |
| ComputeNumberDensity() | glotzmd::Simulation | [virtual] |
| ComputePotentialEnergy() | glotzlammps::Simulation | [virtual] |
| ComputePressure() | glotzlammps::Simulation | [virtual] |
| ComputeTemperature() | glotzlammps::Simulation | [virtual] |
| ComputeTimestep() | glotzlammps::Simulation | |
| ComputeTotalEnergy() | glotzlammps::Simulation | [virtual] |
| ComputeVirial() | glotzmd::Simulation | [virtual] |
| ComputeVolumeFraction() | glotzmd::Simulation | [virtual] |
| ConvertType(int) | glotzlammps::Simulation | [private] |
| Create(std::string &) | glotzutil::Serializable | [static] |
| DPD enum value | glotzlammps::Simulation | [private] |
| EnsemblePotential() | glotzsimapi::SimulationApi | [virtual] |
| Fail() | glotzmd::Simulation | |
| FinalizeUnserialization() | glotzmd::Simulation | [protected] |
| FORWARD enum value | glotzmd::Simulation | [protected] |
| FULL enum value | glotzlammps::Simulation | [private] |
| gBaseObject | glotzmd::Simulation | |
| gBead | glotzmd::Simulation | |
| gBoundaryConditions | glotzmd::Simulation | |
| gDimensions | glotzmd::Simulation | |
| GetBeadList() | glotzmd::Simulation | |
| GetBoundaryConditions() | glotzmd::Simulation | |
| GetDimensions() | glotzmd::Simulation | |
| GetEnsemble() | glotzmd::Simulation | |
| GetEnsembleExtensives() | glotzsimapi::SimulationApi | [virtual] |
| GetEnsembleIntensives() | glotzsimapi::SimulationApi | [virtual] |
| GetErrorList() | glotzmd::Simulation | |
| GetIdentifier() | glotzutil::Serializable | [virtual] |
| GetMovesPerCycle() | glotzsimapi::SimulationApi | [virtual] |
| GetNumberOfBeads() | glotzmd::Simulation | |
| GetNumberOfObjects() | glotzmd::Simulation | |
| GetNumberOfParticles() | glotzmd::Simulation | |
| GetNumberOfPotentials() | glotzmd::Simulation | |
| GetNumberOfRigidBodies() | glotzmd::Simulation | |
| GetNumberOfSimulationModifiers() | glotzmd::Simulation | |
| GetNumberOfSprings() | glotzmd::Simulation | |
| GetObjects() | glotzmd::Simulation | |
| GetParticleList() | glotzmd::Simulation | |
| GetSequencer() const | glotzutil::Listable | |
| GetTargetPressure() | glotzmd::Simulation | |
| GetTargetTemperature() | glotzmd::Simulation | |
| GetTimestep() | glotzmd::Simulation | |
| GetTimesteps() | glotzmd::Simulation | [virtual] |
| gEventManager | glotzmd::Simulation | |
| gExtensive | glotzsimapi::SimulationApi | [protected] |
| gForceRoutine | glotzmd::Simulation | |
| gIntegrationScheme | glotzmd::Simulation | |
| gIntensive | glotzsimapi::SimulationApi | [protected] |
| gInteractingObject | glotzmd::Simulation | |
| GLOTZILLA_MC enum value | glotzsimapi::SimulationApi | [protected] |
| GLOTZILLA_MD enum value | glotzsimapi::SimulationApi | [protected] |
| GLOTZILLA_PT enum value | glotzsimapi::SimulationApi | [protected] |
| gParticle | glotzmd::Simulation | |
| gPotential | glotzmd::Simulation | |
| gPotentialMap | glotzmd::Simulation | |
| GRANULAR enum value | glotzlammps::Simulation | [private] |
| gRigidBody | glotzmd::Simulation | |
| gSimulation | glotzmd::BaseObject | [protected] |
| gSimulationModifier | glotzmd::Simulation | |
| gSimulationType | glotzsimapi::SimulationApi | [protected] |
| gSpring | glotzmd::Simulation | |
| gTimestep | glotzmd::Simulation | |
| gTimesteps | glotzsimapi::SimulationApi | |
| gUnits | glotzmd::Simulation | |
| HandleEvents() | glotzmd::Simulation | [protected] |
| Initialize() | glotzlammps::Simulation | |
| InitializeLammps() | glotzlammps::Simulation | [private] |
| InitializeMpi(int, char **, MPI_Comm) | glotzlammps::Simulation | |
| InvertVelocities() | glotzlammps::Simulation | [protected] |
| LAMMPS enum value | glotzsimapi::SimulationApi | [protected] |
| Listable() | glotzutil::Listable | |
| Listable(const Listable &) | glotzutil::Listable | |
| Load(const char *) | glotzmd::Simulation | |
| mAtomStyle | glotzlammps::Simulation | [private] |
| mCommand | glotzlammps::Simulation | [private] |
| mDataFileIsCurrent | glotzlammps::Simulation | [private] |
| mDirectionOfTime | glotzmd::Simulation | [protected] |
| mIsFirstTimeVis3d | glotzmd::Simulation | [protected] |
| mLammps | glotzlammps::Simulation | [protected] |
| MOLECULAR enum value | glotzlammps::Simulation | [private] |
| mPossibleEvents | glotzmd::Simulation | [protected] |
| mRigidBodyUpdater | glotzmd::Simulation | [protected] |
| mSequencer | glotzutil::Listable | [protected] |
| OnEvent() | glotzmd::Simulation | [protected, virtual] |
| operator++(int) | glotzlammps::Simulation | [virtual] |
| operator+=(int) | glotzlammps::Simulation | [virtual] |
| operator--(int) | glotzlammps::Simulation | [virtual] |
| operator-=(int) | glotzlammps::Simulation | [virtual] |
| PerformSingleMove() | glotzsimapi::SimulationApi | |
| PrintForces(std::ostream &) | glotzmd::Simulation | |
| PrintInputScript(std::ostream &) | glotzlammps::Simulation | |
| PrintKineticEnergy(std::ostream &os) | glotzlammps::Simulation | |
| PrintLammpsRestartData(char *) | glotzlammps::Simulation | |
| PrintMinimalRestartData(std::ostream &) | glotzsimapi::SimulationApi | [virtual] |
| PrintParticles(std::ostream &, std::string &) | glotzmd::Simulation | |
| PrintParticles(std::ostream &, const char *) | glotzmd::Simulation | |
| PrintPositions(std::ostream &) | glotzmd::Simulation | |
| PrintPotentialEnergies(std::ostream &) | glotzmd::Simulation | |
| PrintPotentialEnergy(std::ostream &os) | glotzlammps::Simulation | |
| PrintPressure(std::ostream &os) | glotzlammps::Simulation | |
| PrintRestartData(std::ostream &) | glotzsimapi::SimulationApi | [virtual] |
| PrintTemperature(std::ostream &os) | glotzlammps::Simulation | |
| PrintTotalEnergy(std::ostream &os) | glotzlammps::Simulation | |
| PrintVelocities(std::ostream &) | glotzmd::Simulation | |
| PrintVis3d(std::ostream &) | glotzmd::Simulation | |
| PrintVis3dTemplate(std::ostream &) | glotzmd::Simulation | |
| PrintVisual(std::ostream &os) | glotzlammps::Simulation | |
| RemoveInteraction(Potential *) | glotzmd::Simulation | |
| RemoveParticle(Particle *) | glotzmd::Simulation | |
| RemoveSimulationModifier(SimulationModifier *) | glotzmd::Simulation | |
| RescaleSystem(const glotz_flt) | glotzmd::Simulation | |
| RescaleSystem(const glotz_vec) | glotzmd::Simulation | |
| RescaleSystem(const glotz_flt, const glotz_flt, const glotz_flt) | glotzmd::Simulation | |
| RescaleVelocities(const glotz_flt) | glotzmd::Simulation | |
| Restore(const char *) | glotzmd::Simulation | |
| Run(int) | glotzlammps::Simulation | |
| Save(const char *) | glotzmd::Simulation | |
| Save() | glotzmd::Simulation | |
| ScanLammpsRestartData(char *) | glotzlammps::Simulation | |
| ScanRestartData(std::istream &) | glotzsimapi::SimulationApi | [virtual] |
| SendCustomLammpsCommand(char *) | glotzlammps::Simulation | |
| Serializable() | glotzutil::Serializable | [inline] |
| Serialize(glotzutil::Archive &) | glotzmd::Simulation | [virtual] |
| SetBoundaryConditions(BoundaryConditions *) | glotzmd::Simulation | |
| SetConfiguration(glotzdatasources::Lattice *) | glotzmd::Simulation | |
| SetDimensions(const int) | glotzmd::Simulation | |
| SetEnsembleIntensives(std::vector< glotz_flt >) | glotzsimapi::SimulationApi | [virtual] |
| SetForceRoutine(ForceRoutine *) | glotzmd::Simulation | |
| SetIntegrationScheme(IntegrationScheme *) | glotzmd::Simulation | |
| SetParentSimulation(Simulation *) | glotzmd::BaseObject | |
| SetSequencer(int) | glotzutil::Listable | |
| SetTimestep(const glotz_flt) | glotzmd::Simulation | |
| SetUnits(Units *) | glotzmd::Simulation | |
| Simulation() | glotzlammps::Simulation | |
| Simulation(const Simulation &) | glotzlammps::Simulation | |
| Simulation(int, char **, MPI_Comm) | glotzlammps::Simulation | |
| glotzmd::Simulation::Simulation(const Simulation &) | glotzmd::Simulation | |
| SimulationApi() | glotzsimapi::SimulationApi | |
| SimulationApi(const SimulationApi &) | glotzsimapi::SimulationApi | |
| sObjectFactory | glotzutil::Serializable | [static] |
| StepBackward(int) | glotzlammps::Simulation | [virtual] |
| StepForward(int) | glotzlammps::Simulation | [virtual] |
| Timestep() | glotzmd::Simulation | [protected] |
| UpdateVariables() | glotzlammps::Simulation | [private] |
| WriteInputFile() | glotzlammps::Simulation | [private] |
| ZeroLinearMomentum() | glotzmd::Simulation | |
| ~BaseObject() | glotzmd::BaseObject | [virtual] |
| ~Listable() | glotzutil::Listable | [virtual] |
| ~Serializable() | glotzutil::Serializable | [inline, virtual] |
| ~Simulation() | glotzlammps::Simulation | [virtual] |
| ~SimulationApi() | glotzsimapi::SimulationApi | [virtual] |
