glotzmd::Polymer Class Reference

#include <Polymer.h>

Inheritance diagram for glotzmd::Polymer:

List of all members.

Public Types
typedef std::vector < Bond * >	BondList
Public Member Functions
	Polymer ()
	Polymer (const Polymer &)
virtual Polymer *	Clone ()
virtual	~Polymer ()
void	OnEvent ()
unsigned int	GetNumberOfBeads ()
unsigned int	GetNumberOfRigidBodies ()
unsigned int	GetNumberOfSprings ()
Bead *	GetBead (unsigned int)
RigidBody *	GetRigidBody (unsigned int)
Spring *	GetSpring (unsigned int)
void	AddBead (Bead *)
void	AddRigidBody (RigidBody *)
void	AddBond (Spring *, Bead *, Bead *)
void	PreForceMove ()
	Defines the pre-force integration method.
void	PostForceMove ()
	Defines the post-force integration method.
void	SetVelocity (const glotz_vec &)
void	ModifyVelocity (const glotz_vec &)
void	SetPosition (const glotz_vec &)
void	SetPositionInBox (const glotz_vec &)
void	SetVelocity (const glotz_flt, const glotz_flt, const glotz_flt)
void	SetPosition (const glotz_flt, const glotz_flt, const glotz_flt)
void	RescaleVelocity (const glotz_flt)
void	InvertVelocity ()
Bead *	GetBeadPtr (const int)
	Utility function for restarting.
glotz_vec	ComputePosition () const
glotz_vec	ComputeVelocity () const
virtual glotz_flt	ComputeVolume () const
glotz_flt	ComputeLinearKineticEnergy () const
glotz_flt	ComputeAngularKineticEnergy () const
virtual int	ComputeDegreesOfFreedom (const int) const
int	GetNumberOfSprings () const
int	GetNumberOfRigidBodies () const
int	GetNumberOfNonRigidBeads () const
int	Size () const
glotz_flt	GetMass () const
virtual void	PrintVis3dTemplate (std::ostream &)
virtual void	PrintVis3d (std::ostream &)
Public Attributes
BeadList	xLocalBead
	Local vector of ALL beads.
BeadList	xBead
	Local vector of FREE beads (not in rigid bodies).
RigidBodyList	xRigidBody
	Local vector of all rigid bodies.
BondList	xBond
	Local vector of all bonds.
Protected Attributes
SimulationEvent	mPossibleEvents
Classes
struct	Bond

---

Member Typedef Documentation

typedef std::vector<Bond*> glotzmd::Polymer::BondList

---

Constructor & Destructor Documentation

glotzmd::Polymer::Polymer

(

)

glotzmd::Polymer::Polymer

(

const Polymer &

rhs

)

Parameters:

rhs

is a reference to the Polymer to be copied

Note:

uses upcasting to copy beads and calls Polymer::GetBeadPtr to return the local bead with particular ID.

glotzmd::Polymer::~Polymer

(

)

[virtual]

Note:

Calls destructor for all RigidBody's, Bead's, and Spring's

---

Member Function Documentation

Polymer * glotzmd::Polymer::Clone

(

)

[virtual]

Returns:

a pointer to a new identical glotzmd::Polymer. Uses Polymer copy constructor

Implements glotzmd::Particle.

void glotzmd::Polymer::OnEvent

(

)

[virtual]

Reimplemented from glotzmd::BaseObject.

unsigned int glotzmd::Polymer::GetNumberOfBeads

(

)

[virtual]

Reimplemented from glotzmd::Particle.

unsigned int glotzmd::Polymer::GetNumberOfRigidBodies

(

)

[virtual]

Reimplemented from glotzmd::Particle.

unsigned int glotzmd::Polymer::GetNumberOfSprings

(

)

[virtual]

Reimplemented from glotzmd::Particle.

Bead * glotzmd::Polymer::GetBead

(

unsigned int

i

)

[virtual]

Reimplemented from glotzmd::Particle.

RigidBody * glotzmd::Polymer::GetRigidBody

(

unsigned int

i

)

[virtual]

Reimplemented from glotzmd::Particle.

Spring * glotzmd::Polymer::GetSpring

(

unsigned int

i

)

[virtual]

Reimplemented from glotzmd::Particle.

void glotzmd::Polymer::AddBead

(

Bead *

bead

)

void glotzmd::Polymer::AddRigidBody

(

RigidBody *

rbody

)

void glotzmd::Polymer::AddBond	(	Spring *	spring,
		Bead *	beadi,
		Bead *	beadj
	)

void glotzmd::Polymer::PreForceMove

(

)

[virtual]

Defines the pre-force integration method.

Implements glotzmd::Particle.

void glotzmd::Polymer::PostForceMove

(

)

[virtual]

Defines the post-force integration method.

Implements glotzmd::Particle.

void glotzmd::Polymer::SetVelocity

(

const glotz_vec &

velocity

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::ModifyVelocity

(

const glotz_vec &

dv

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::SetPosition

(

const glotz_vec &

position

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::SetPositionInBox

(

const glotz_vec &

position

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::SetVelocity	(	const	glotz_flt,
		const	glotz_flt,
		const	glotz_flt
	)			[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::SetPosition	(	const	glotz_flt,
		const	glotz_flt,
		const	glotz_flt
	)			[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::RescaleVelocity

(

const

glotz_flt

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::InvertVelocity

(

)

[virtual]

Implements glotzmd::Particle.

Bead * glotzmd::Polymer::GetBeadPtr

(

const

int

)

Utility function for restarting.

Parameters:

id

is the sequencer of the desired bead

Returns:

a pointer to a bead with the corresponding sequencer, otherwise 0x0 (GLOTZ_EMPTY_POINTER)

glotz_vec glotzmd::Polymer::ComputePosition

(

)

const [virtual]

Implements glotzmd::Particle.

glotz_vec glotzmd::Polymer::ComputeVelocity

(

)

const [virtual]

Implements glotzmd::Particle.

glotz_flt glotzmd::Polymer::ComputeVolume

(

)

const [virtual]

Implements glotzmd::Particle.

glotz_flt glotzmd::Polymer::ComputeLinearKineticEnergy

(

)

const [virtual]

Implements glotzmd::Particle.

glotz_flt glotzmd::Polymer::ComputeAngularKineticEnergy

(

)

const [virtual]

Implements glotzmd::Particle.

int glotzmd::Polymer::ComputeDegreesOfFreedom

(

const

int

)

const [virtual]

Implements glotzmd::Particle.

int glotzmd::Polymer::GetNumberOfSprings

(

)

const

int glotzmd::Polymer::GetNumberOfRigidBodies

(

)

const

int glotzmd::Polymer::GetNumberOfNonRigidBeads

(

)

const

int glotzmd::Polymer::Size

(

)

const [virtual]

Reimplemented from glotzmd::Particle.

glotz_flt glotzmd::Polymer::GetMass

(

)

const [virtual]

Reimplemented from glotzmd::Particle.

void glotzmd::Polymer::PrintVis3dTemplate

(

std::ostream &

os

)

[virtual]

Implements glotzmd::Particle.

void glotzmd::Polymer::PrintVis3d

(

std::ostream &

os

)

[virtual]

Implements glotzmd::Particle.

---

Member Data Documentation

BeadList glotzmd::Polymer::xLocalBead

Local vector of ALL beads.

BeadList glotzmd::Polymer::xBead

Local vector of FREE beads (not in rigid bodies).

RigidBodyList glotzmd::Polymer::xRigidBody

Local vector of all rigid bodies.

BondList glotzmd::Polymer::xBond

Local vector of all bonds.

SimulationEvent glotzmd::Polymer::mPossibleEvents [protected]

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The documentation for this class was generated from the following files:

• Glotzilla/src/glotzmd/trunk/SourceCode/Polymer.h
• Glotzilla/src/glotzmd/trunk/SourceCode/Polymer.cpp

---