Here is a list of all class members with links to the classes they belong to:
- P
: glotzsimapi::type
- Pair
: glotzopt::PairList
, glotzopt::Pair
, glotzopt::VerletList::Pair
, glotzopt::Pair
, glotzopt::VerletList::Pair
- pairCount
: glotzwrappers::PotentialGroup
- PairList
: glotzopt::PairList::Iterator
, glotzopt::VerletList
, glotzopt::PairList
- pairList1
: glotzwrappers::PotentialGroup
- pairList2
: glotzwrappers::PotentialGroup
- Pairwise()
: glotzmc::HardSphere
- Pan()
: glotzopengl::TrackballStyleMouse
- PARALLELOPIPED
: glotzmc::McConvexComponent
- ParallelTempering()
: glotzptempering::ParallelTempering
- ParallelTemperingMPI()
: glotzptempering::ParallelTemperingMPI
- parent
: glotzwrappers::GlotzillaAtomLeaf
- ParseBinary()
: glotzopengl::GlObject
, glotzopengl::GlutWindow
- ParseCommandIfNecessary()
: glotzmd::CommandLineInterface
- ParseRestartData()
: glotzmc::McBead
, glotzmc::McConvexComponent
, glotzmc::McField
, glotzmc::McParticle
, glotzmc::McPatchyBead
, glotzmc::McSimulationComponent
, glotzmc::Potential
, glotzmc::PotentialRoutine
, glotzmc::TrialMove
, glotzmc::McConvexComponent
, glotzmc::McField
, glotzmc::McParticle
, glotzmc::McPatchyBead
, glotzmc::McSimulationComponent
, glotzmc::Potential
, glotzmc::PotentialRoutine
, glotzmc::TrialMove
, glotzsimapi::BoundaryConditions
, glotzsimapi::Units
, glotztps::TpsSimulationComponent
, glotzmath::RandomNumberGenerator
, glotzmc::Interaction
, glotzmc::McBead
, glotzmc::BoundaryConditions
, glotzmc::Interaction
- ParseText()
: glotzcluster::Cluster
- ParseXml()
: glotzcluster::Cluster
- PARTICLE
: glotzmc::McSimulation
- Particle()
: glotzmd::Particle
- PARTICLE_COMPUTE_POSITION_UNDEF
: glotzmd::Error
- PARTICLE_COMPUTE_VELOCITY_UNDEF
: glotzmd::Error
- PARTICLE_COMPUTE_VOLUME_UNDEF
: glotzmd::Error
- PARTICLE_DATA
: glotzmc::TrialMove
- PARTICLE_GETBEAD
: glotzmd::Error
- PARTICLE_GETRIGIDBODY
: glotzmd::Error
- PARTICLE_GETSPRING
: glotzmd::Error
- PARTICLE_INSERTED
: glotzmd::Event
- PARTICLE_MOVE_UNDEF
: glotzmd::Error
- PARTICLE_REMOVED
: glotzmd::Event
- PARTICLE_SETPOS_UNDEF
: glotzmd::Error
- PARTICLES_MODIFIED
: glotzmd::Event
- ParticleTracker()
: glotzmd::ParticleTracker
- PassMovesAccepted()
: glotzmc::TrialMove
, glotzmc::TrialRotation
, glotzmc::TrialTranslation
, glotzmc::TrialVolumeChange
, glotzmc::TrialMove
, glotzmc::TrialRotation
, glotzmc::TrialTranslation
, glotzmc::TrialVolumeChange
- PassMovesAttempted()
: glotzmc::TrialMove
, glotzmc::TrialRotation
, glotzmc::TrialTranslation
, glotzmc::TrialVolumeChange
, glotzmc::TrialMove
, glotzmc::TrialRotation
, glotzmc::TrialTranslation
, glotzmc::TrialVolumeChange
- PATCHY_BEAD
: glotzmc::McParticle
- PATH
: glotzmc::McSimulationComponent
- PAUSE
: glotzmd::StandardCommandLine
- PE()
: molesimAPI::IAPIVector
, glotzwrappers::GlotzillaVector3D
- PEa1Tv1()
: molesimAPI::IAPIVector
, glotzwrappers::GlotzillaVector3D
- PerformsFinalMove()
: glotzmd::EulerIntegrator
, glotzmd::IntegrationScheme
, glotzmd::LeapFrogIntegrator
, glotzmd::VelocityVerletIntegrator
- PerformSingleMove()
: glotzmc::McSimulation
, glotzmc::Simulation
, glotzmc::McSimulation
, glotzsimapi::SimulationApi
- PerformsInitialMove()
: glotzmd::EulerIntegrator
, glotzmd::IntegrationScheme
, glotzmd::LeapFrogIntegrator
, glotzmd::VelocityVerletIntegrator
- PERIODIC
: glotzmc::BoundaryConditions
, glotzsimapi::BoundaryConditions
- PeriodicBoundary()
: glotzmc::PeriodicBoundary
, glotzsimapi::PeriodicBoundary
- PERSPECTIVE
: glotzopengl::GlutWindow
- Perturb()
: glotzdatasources::Lattice
- PlaceInCorrectCell()
: glotzopt::CellList
- PlanarGraph
: glotzmc::Edge
, glotzmc::Face
, glotzmc::Vertex
, glotzmc::PlanarGraph
- Plgndr()
: glotzcluster::YlmTransformShapeDescriptor
- POINT_CONVEX
: glotzmc::McParticle
- POINT_PATCHY_PARTICLE
: glotzmc::McParticle
- PointMass()
: glotzmd::RigidBody::PointMass
- PointMassList
: glotzmd::RigidBody
- PointObject()
: glotzcluster::PointObject
- PointParticle()
: glotzmd::PointParticle
- Polygon()
: glotzopengl::Polygon
- Polymer()
: glotzmd::Polymer
- PopulatePoints()
: glotzdatasources::Lattice
- position()
: molesimAPI::IAPIAtomPositionDefinition
, glotzwrappers::GlotzillaAtomPositionDefinition
, glotzwrappers::GlotzillaAtomPositionDefinitionSimple
, glotzwrappers::GlotzillaNativeAtomPositionDefinition
- POSITION
: glotzopengl::GlObject
- PositionedObject()
: glotzopt::PositionedObject
- POSITIVE_X
: glotzopt::BoundaryUtil
, glotzopt::VerletList
- POSITIVE_Y
: glotzopt::BoundaryUtil
, glotzopt::VerletList
- POSITIVE_Z
: glotzopt::BoundaryUtil
, glotzopt::VerletList
- PostForceMove()
: glotzmd::Particle
, glotzmd::PointParticle
, glotzmd::Polymer
, glotzmd::RigidParticle
- Potential()
: glotzmc::Potential
, glotzmd::Potential
- POTENTIAL
: glotzmc::Interaction
- PotentialGroup()
: glotzwrappers::PotentialGroup
- potentialList
: glotzwrappers::PotentialGroup
- PotentialRoutine()
: glotzmc::PotentialRoutine
- POTENTIALROUTINE
: glotzmc::McSimulation
- PowerCycle()
: glotzannealing::PowerCycle
- PreForceMove()
: glotzmd::Particle
, glotzmd::PointParticle
, glotzmd::Polymer
, glotzmd::RigidParticle
- PRESSURE
: glotzmc::TrialMove
- Print()
: glotzcluster::Cluster
, glotzcluster::ComplexShapeDescriptor
, glotzcluster::RealShapeDescriptor
, glotzcluster::ShapeDescriptor
, glotzcluster::YlmCentroidShapeDescriptor
, glotzdynanalysis::AveragedOverlapParameter
, glotzdynanalysis::AveragedSquaredDisplacement
, glotzdynanalysis::AveragedStructureSelfCorrelation
, glotzdynanalysis::DistanceMatrix
, glotzdynanalysis::DynamicsAnalysis
, glotzdynanalysis::NonGaussianParameter
, glotzdynanalysis::OverlapMatrix
, glotzdynanalysis::StructureSelfCorrelationMatrix
, glotzmath::ConstHistogram< T >
, glotzmath::DynamicHistogram< T >
, glotzmath::Filter1d
, glotzmath::Function1d
, glotzmath::Matrix< TYPE, ROWS, COLS >
, glotzmath::Vector< TYPE, SIZE >
, glotzmath::Histogram< T >
, glotzmath::MapAverage< T1, T2 >
, glotzmath::MapHistogram< T1, T2 >
, glotzmath::StaticHistogram< T, NBINS >
, glotzmc::OldCell< bead_t, convex_t, patchybead_t >
, glotzmc::OldCellList< bead_t, convex_t, patchybead_t >
, glotzmc::OldCell< bead_t, convex_t, patchybead_t >
, glotzmc::OldCellList< bead_t, convex_t, patchybead_t >
, glotzopengl::Box
, glotzopengl::Cylinder
, glotzopengl::Disk
, glotzopengl::GlObject
, glotzopengl::ImageRectangle
, glotzopengl::TexturedSphere
, glotzopt::Cell
, glotzopt::CellList
, glotzopt::PositionedObject
, glotzstdanalysis::RadialDistributionFunction
- PRINT_VIS_UNDEF
: glotzmd::Error
- PrintAnnealingSummary()
: glotzannealing::AnnealingModule
- PrintContents()
: glotzmath::Vector< TYPE, SIZE >
- PrintData()
: glotzmd::FluctuationMetric
, glotzmd::ParticleTracker
- PrintEvents()
: glotzmd::SimulationEventManager
- PrintForces()
: glotzmd::Simulation
- PrintGene()
: Gene
, HillClimb
, HillClimb_MPI
, SimulatedAnnealing
- PrintGene_Divisible()
: Gene
- PrintGeneBit()
: GeneBit
- PrintGeneBit_Divisible()
: GeneBit
- PrintGenes()
: GeneticAlgorithm
, GeneticAlgorithm_MPI
, RandomRestart
, RandomRestart_MPI
- PrintGenes_Divisible()
: GeneticAlgorithm
, GeneticAlgorithm_MPI
- PrintInputScript()
: glotzlammps::Simulation
- PrintKineticEnergy()
: glotzlammps::Simulation
- PrintLammpsEquivalent()
: glotzmc::LennardJones
, glotzmc::LennardJonesLongRangeCorrected
, glotzmc::CustomInteraction
, glotzmc::CustomInteractionNew
, glotzmc::HybridInteraction
, glotzmc::Interaction
, glotzmc::LennardJones
, glotzmc::LennardJonesUnits
, glotzmc::Potential
, glotzmc::SingleComponentInteraction
, glotzmc::SoftPotential
, glotzmc::TwelveSixLjPotential
, glotzmc::Units
, glotzmc::Yukawa
, glotzmc::YukawaLj
, glotzmc::YukawaPotential
, glotzmc::Potential
, glotzmc::SingleComponentInteraction
, glotzmc::SoftInteraction
, glotzmc::SoftPotential
, glotzmc::WeeksChandlerAndersen
, glotzmc::Yukawa
, glotzmc::YukawaLj
, glotzsimapi::LennardJonesUnits
, glotzmc::YukawaPotential
, glotzmc::SoftInteraction
, glotzmc::TwelveSixLjPotential
, glotzmc::WeeksChandlerAndersen
, glotzmc::Interaction
, glotzmc::LennardJonesLongRangeCorrected
, glotzmc::CustomInteraction
, glotzmc::CustomInteractionNew
, glotzmc::HybridInteraction
- PrintLammpsRestartData()
: glotzlammps::Simulation
- printMappings()
: glotzwrappers::AtomTypeManager
, glotzwrappers::ObjectManager
- PrintMinimalRestartData()
: glotzmc::Interaction
, glotzmc::BoundaryConditions
, glotzmc::Interaction
, glotzmc::Simulation
, glotzmc::Units
, glotzsimapi::SimulationApi
, glotztps::TpsSimulationComponent
- PrintParticles()
: glotzmd::Simulation
- PrintPhysics()
: glotzmd::RigidBody
- PrintPositions()
: glotzmc::McSimulation
, glotzmd::Simulation
, glotzmc::McSimulation
- PrintPotentialEnergies()
: glotzmd::Simulation
- PrintPotentialEnergy()
: glotzlammps::Simulation
, glotzmc::McSimulation
, glotzmd::Simulation
, glotzmc::McSimulation
- PrintPressure()
: glotzlammps::Simulation
- PrintRestartData()
: glotzmc::McSmoothTetrahedralField
, glotzmc::HybridInteraction
, glotzmc::SingleComponentInteraction
, glotzmc::McParticle
, glotzmc::TrialTranslation
, glotzmc::McSmoothTetrahedron
, glotzmc::DzugutovPotential
, glotzmc::Yukawa
, glotzmc::WeeksChandlerAndersen
, glotzmc::SoftPotential
, glotzmc::HarrowellPotential
, glotzmc::PotentialRoutine
, glotzmc::TrialMove
, glotzmc::SingleComponentInteraction
, glotzmc::LennardJones
, glotzmc::McStoreRestartData
, glotzsimapi::BoundaryConditions
, glotzmc::McTetrahedralField
, glotzmc::TwelveSixLjPotential
, glotzmc::SquareWellPotential
, glotzmc::McSmoothSymmetricTetrahedron
, glotzmc::IdealGasPotential
, glotzmc::BrutePotential
, glotztps::TpsSimulationComponent
, glotzsimapi::Units
, glotzmc::McPointPatchyParticle
, glotzmc::DoubleWellPotential
, glotzmc::McPointConvexParticle
, glotzmath::RandomNumberGenerator
, glotzmc::Interaction
, glotzmc::HardSpherePotential
, glotzmc::BinaryMixtureInteraction
, glotzmc::BinaryLJ
, glotzmc::McBead
, glotzsimapi::PeriodicBoundary
, glotzmc::HybridInteraction
, glotzmath::StdLibErand48
, glotzmc::BinaryLJ
, glotzmc::McBead
, glotzmc::CustomInteractionNew
, glotzmc::McParticle
, glotzmc::LennardJones
, glotzmc::BlankInteraction
, glotzmc::BrutePotential
, glotzmc::CellPotential
, glotzmc::LennardJonesLongRangeCorrected
, glotzmc::BinaryLJGlass
, glotzmc::HarrowellPotential
, glotzmc::HardSphere
, glotzmc::HardSpherePotential
, glotzmc::Harrowell
, glotzmc::TrialVolumeChange
, glotzmc::DzugutovPotential
, glotzmc::LennardJonesLongRangeCorrected
, glotzmc::HardSphere
, glotzmc::CellPotential
, glotzmc::CustomInteraction
, glotzmc::CustomInteractionNew
, glotzmc::Dzugutov
, glotzmc::BlankInteraction
, glotzmc::Harrowell
, glotzmc::BoundaryConditions
, glotzmc::CustomInteraction
, glotzmc::McConvexComponent
, glotzmc::McField
, glotzmc::McParallelepiped
, glotzmc::McPatchyBead
, glotzmc::IdealGasPotential
, glotzmc::McSimulationComponent
, glotzmc::Interaction
, glotzmc::WcaPotential
, glotzmc::Potential
, glotzmc::YukawaLj
, glotzmc::Yukawa
, glotzmc::SoftInteraction
, glotzmc::DoubleWellPotential
, glotzmc::TrialRotation
, glotzmc::Dzugutov
, glotzmc::McPatchyBead
, glotzmc::BinaryMixtureInteraction
, glotzmc::TrialTranslation
, glotzmc::YukawaLj
, glotzmc::Simulation
, glotzmc::YukawaPotential
, glotzmc::McConvexComponent
, glotzmc::McParallelepiped
, glotzmc::McTetrahedron
, glotzmc::McPointParticle
, glotzmc::McSimulationComponent
, glotzmc::BinaryLJGlass
, glotzmc::PotentialRoutine
, glotzmc::McTetrahedron
, glotzmc::McSmoothSymmetricTetrahedron
, glotzmc::Potential
, glotzmc::TrialMove
, glotzmc::SoftInteraction
, glotzmc::TrialRotation
, glotzmc::SoftPotential
, glotzmc::McPointParticle
, glotzmc::YukawaPotential
, glotzsimapi::LennardJonesUnits
, glotzsimapi::SimulationApi
, glotzmc::McSmoothTetrahedralField
, glotzmc::McTetrahedralField
, glotzmc::McSmoothTetrahedron
, glotzmc::WeeksChandlerAndersen
, glotzmc::TrialVolumeChange
, glotzmc::McField
, glotzmc::McPointPatchyParticle
, glotzmc::McPointConvexParticle
, glotzmc::SquareWellPotential
, glotzmc::McStoreRestartData
, glotzmc::TwelveSixLjPotential
, glotzmc::PeriodicBoundary
, glotzmc::Units
, glotzmc::WcaPotential
- PrintRestartFile()
: pathsampling::MdTps
, glotztps::TpsModule< S, E >
- PrintScript()
: glotzmd::VmdVisualizer
- PrintSeed()
: glotzmath::RandomNumberGenerator
, glotzmath::StdLibErand48
- PrintTemperature()
: glotzlammps::Simulation
- PrintTemplate()
: glotzmd::VmdVisualizer
- PrintTotalEnergy()
: glotzlammps::Simulation
- PrintVelocities()
: glotzmd::Simulation
- PrintVis3d()
: glotzmd::Spring
, glotzmd::InteractingObject
, glotzmd::Particle
, glotzmd::PointParticle
, glotzmd::Bead
, glotzmd::RigidParticle
, glotzmd::Polymer
, glotzmd::Simulation
, glotzmd::ParticleTracker
- PrintVis3dTemplate()
: glotzmd::Polymer
, glotzmd::InteractingObject
, glotzmd::RigidParticle
, glotzmd::PointParticle
, glotzmd::Simulation
, glotzmd::Bead
, glotzmd::Spring
, glotzmd::Particle
- PrintVisual()
: glotzcluster::Cluster
, glotzmc::McPointParticle
, glotzmc::McParticle
, glotzmc::McPointParticle
, glotzopt::CellList
, glotzmc::Bead
, glotzlammps::Simulation
, glotzsimapi::SpringApi
, glotzmc::McConvexComponent
, glotzmc::McPatchyBead
, glotzmc::McSimulation
, glotzmc::McConvexComponent
, glotzmc::McBead
, glotzmc::Spring
, glotzmc::McBead
, glotzmc::McPatchyBead
, glotzmc::McSimulation
, glotzmc::Bead
- PrintVisualTemplate()
: glotzmc::McSimulation
, glotzmc::Bead
, glotzmc::ConvexComponent
, glotzmc::McSimulation
, glotzmc::Bead
, glotzmc::McParticle
, glotzmc::McPatchyBead
, glotzmc::Spring
, glotzmc::McParticle
, glotzmc::McBead
, glotzsimapi::SpringApi
, glotzmc::McConvexComponent
, glotzmc::McPatchyBead
, glotzmc::McConvexComponent
, glotzmc::McBead
- Product
: glotzmath::Matrix< TYPE, ROWS, COLS >
- PROJECTION
: glotzdynanalysis::StructureSelfCorrelationAnalysis
- PTRACKER_MSD
: glotzmd::Error
- PtTrialForward()
: glotzptempering::PtTrialForward
- PtTrialForwardMPI()
: glotzptempering::PtTrialForwardMPI
- PtTrialMove()
: glotzptempering::PtTrialMove
- PtTrialSwap()
: glotzptempering::PtTrialSwap
, glotzptempering::ParallelTempering
- PtTrialSwapMPI
: glotzptempering::ParallelTemperingMPI
, glotzptempering::PtTrialSwapMPI
- Push()
: glotzmath::Histogram< T >
, glotzmath::StatisticsTool< TYPE >
- push_back()
: glotzmath::StatisticsTool< TYPE >
, glotzmath::MapAverage< T1, T2 >
- PushBack()
: glotzmath::StatisticsTool< TYPE >
, glotzmath::MapAverage< T1, T2 >
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