Here is a list of all class members with links to the classes they belong to:

- s -

• S : glotzsimapi::type
• SAME_TYPE : glotzmd::CellForceMulti , glotzopt::VerletList
• Save() : glotzmc::McBead , glotzmc::McConvexComponent , glotzmd::Simulation , glotzmc::McParallelepiped , glotzmc::McBeadPatch , glotzmc::McParticle , glotzmc::McPatchyBead , glotzmc::McBead , glotzmc::McConvexComponent , glotzmc::McParallelepiped , glotzmc::McBeadPatch , glotzmc::McParticle , glotzmc::McPatchyBead
• SaveGAToFile() : GeneticAlgorithm , GeneticAlgorithm_MPI
• SaveGeneBitToFile() : GeneBit
• SaveGeneToFile() : Gene
• SaveHCToFile() : HillClimb
• SaveSAToFile() : SimulatedAnnealing
• sBoundaryMultiplier : glotzopt::BoundaryUtil
• sBrute : glotzmc::PotentialRoutine
• Sc : glotzsimapi::atom
• SCALE : glotzopengl::GlObject
• Scale() : glotzopengl::Box , glotzopengl::Cylinder , glotzopengl::Disk , glotzopengl::GlObject , glotzopengl::Text
• ScaleResolution() : glotzopengl::DlSphere , glotzopengl::GlObject , glotzopengl::Sphere , glotzopengl::TexturedSphere
• ScanData() : glotzmc::McPointParticle
• ScanLammpsRestartData() : glotzlammps::Simulation
• ScanMinimalRestartData() : glotzmc::Interaction , glotzmc::BoundaryConditions , glotzmc::Interaction , glotzmc::Units , glotztps::TpsSimulationComponent
• ScanRestartData() : glotzmc::BinaryLJ , glotzmc::Potential , glotzmc::SingleComponentInteraction , glotzmc::BinaryLJGlass , glotzmc::SoftInteraction , glotzmc::SoftPotential , glotzmc::BinaryMixtureInteraction , glotzmc::SquareWellPotential , glotzmc::TrialMove , glotzmc::BlankInteraction , glotzmc::TrialRotation , glotzmc::TrialTranslation , glotzmc::BoundaryConditions , glotzmc::TrialVolumeChange , glotzmc::TwelveSixLjPotential , glotzmc::DoubleWellPotential , glotzmc::WcaPotential , glotzmc::WeeksChandlerAndersen , glotzmc::Dzugutov , glotzmc::YukawaLj , glotzmc::YukawaPotential , glotzmc::DzugutovPotential , glotzsimapi::BoundaryConditions , glotzsimapi::LennardJonesUnits , glotzmc::HardSphere , glotzsimapi::PeriodicBoundary , glotzsimapi::SimulationApi , glotzmc::HardSpherePotential , glotzsimapi::Units , glotztps::TpsSimulationComponent , glotzmc::Harrowell , glotzmc::HarrowellPotential , glotzmc::HybridInteraction , glotzmc::IdealGasPotential , glotzmc::Interaction , glotzmc::LennardJones , glotzmc::LennardJonesLongRangeCorrected , glotzmc::McBead , glotzmc::McConvexComponent , glotzmc::McField , glotzmc::McParallelepiped , glotzmc::McParticle , glotzmc::McPatchyBead , glotzmc::McPointConvexParticle , glotzmc::McPointParticle , glotzmc::McPointPatchyParticle , glotzmath::RandomNumberGenerator , glotzmc::McSimulationComponent , glotzmc::McSmoothSymmetricTetrahedron , glotzmath::StdLibErand48 , glotzmc::McSmoothTetrahedralField , glotzmc::McSmoothTetrahedron , glotzmc::BinaryLJ , glotzmc::McStoreRestartData , glotzmc::McTetrahedralField , glotzmc::BinaryLJGlass , glotzmc::McTetrahedron , glotzmc::PeriodicBoundary , glotzmc::BinaryMixtureInteraction , glotzmc::Potential , glotzmc::Simulation , glotzmc::BlankInteraction , glotzmc::SingleComponentInteraction , glotzmc::SoftInteraction , glotzmc::DoubleWellPotential , glotzmc::SoftPotential , glotzmc::SquareWellPotential , glotzmc::Dzugutov , glotzmc::TrialMove , glotzmc::TrialRotation , glotzmc::DzugutovPotential , glotzmc::TrialTranslation , glotzmc::TrialVolumeChange , glotzmc::HardSphere , glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential , glotzmc::HardSpherePotential , glotzmc::WeeksChandlerAndersen , glotzmc::YukawaLj , glotzmc::Harrowell , glotzmc::YukawaPotential , glotzmc::McConvexComponent , glotzmc::HarrowellPotential , glotzmc::McField , glotzmc::McParallelepiped , glotzmc::HybridInteraction , glotzmc::McParticle , glotzmc::McPatchyBead , glotzmc::IdealGasPotential , glotzmc::McPointConvexParticle , glotzmc::McPointParticle , glotzmc::Interaction , glotzmc::McPointPatchyParticle , glotzmc::McSimulationComponent , glotzmc::LennardJones , glotzmc::McSmoothSymmetricTetrahedron , glotzmc::McSmoothTetrahedralField , glotzmc::LennardJonesLongRangeCorrected , glotzmc::McSmoothTetrahedron , glotzmc::McStoreRestartData , glotzmc::McBead , glotzmc::McTetrahedralField , glotzmc::McTetrahedron
• sCell : glotzmc::PotentialRoutine
• sColor : glotzsimapi::ColorMap
• Se : glotzsimapi::atom
• SearchType : HillClimb
• second : glotzopt::VerletList::Pair
• Second() : glotzopt::Pair
• SelectionSort() : GeneticAlgorithm
• SELF : glotzdynanalysis::DisplacementAnalysis , glotzdynanalysis::OverlapParameterAnalysis
• SELF_DISTINCT : glotzdynanalysis::OverlapParameterAnalysis
• SEMICOLON : glotzmc::McField , glotzmc::McParticle , glotzmc::McSimulationComponent , glotzmc::TrialMove
• SendCustomLammpsCommand() : glotzlammps::Simulation
• SendFrame() : glotzmd::GlotzVisualizer , glotzmd::VmdVisualizer
• Serializable() : glotzutil::Serializable
• Serialize() : glotzmd::Bead , glotzmd::OpenGlVisualizer , glotzmd::PointParticle , glotzmd::Potential , glotzmd::Simulation , glotzmd::SoftPotential , glotzmd::TwelveSixLjPotential , glotzmd::VelocityVerletIntegrator , glotzsimapi::PeriodicBoundary , glotzutil::ManagedList< T > , glotzutil::Serializable
• Set() : glotzmath::Vector< TYPE, SIZE >
• Set_Bit() : GeneBit
• Set_IBit_Size() : GeneBit
• SET_SIMCOMP_FREQ : glotzmd::Error
• SetAcceptanceProbability() : glotzptempering::PtTrialMove
• setActionInterval() : molesimAPI::IAPIIntegrator , glotzwrappers::GlotzillaIntegrator
• SetAdjacencyMatrix() : glotzptempering::ParallelTempering , glotzptempering::ParallelTemperingMPI
• SetAdjustMaxStepSize() : glotzmc::TrialMove
• SetAllData() : Gene
• SetAngularVelocity() : glotzmd::RigidBody
• SetAnnealingModule() : glotzannealing::ThermalCycle
• SetAperature() : glotzopengl::Camera
• SetAttemptsPerCycle() : glotzmc::TrialMove , glotzptempering::PtTrialMove , glotztps::TpsTrialMove
• SetBackgroundColor() : glotzopengl::GlutWindow , glotzopengl::Window
• SetBandWidth() : glotzcluster::FkCoefficientShapeDescriptor , glotzcluster::FkTransformShapeDescriptor , glotzcluster::YlmTransformShapeDescriptor
• SetBandwidth() : glotzmath::Filter1d
• SetBarrierHeight() : glotzmc::DoubleWellPotential
• SetBarrierPosition() : glotzmc::DoubleWellPotential
• SetBarrierWidth() : glotzmc::DoubleWellPotential
• SetBead() : glotzmc::MdGhostBead
• SetBeadMass() : glotzmc::McTetrahedron
• SetBeadPtr() : glotzmc::PotentialRoutine
• SetBeadRadius() : glotzmc::McTetrahedron
• SetBeadToBeadDistance() : glotzmc::McTetrahedron
• SetBeadType() : glotzmc::McTetrahedron
• SetBinSize() : glotzmath::DynamicHistogram< T > , glotzstdanalysis::RadialDistributionFunction
• SetBlurDiameter() : glotzcluster::NeighborMap
• SetBlurSigma() : glotzcluster::NeighborMap
• setBoundary() : molesimAPI::IAPIBox , glotzwrappers::GlotzillaBox
• SetBoundary() : glotzopt::CellList , glotzopt::VerletList , glotzopt::VerletListWithCells
• SetBoundaryConditions() : glotzcluster::ClusterCriterion , glotzdynanalysis::DynamicsAnalysis , glotzdynanalysis::NonGaussianParameter , glotzdynanalysis::OverlapCriterion , glotzmc::McSimulation , glotzmc::PotentialRoutine , glotzmc::TrialMove , glotzmc::McSimulation , glotzmc::PotentialRoutine , glotzmc::TrialMove , glotzmd::Simulation , glotzstdanalysis::RadialDistributionFunction
• SetBoundaryMultiplier() : glotzopt::Cell
• SetBox() : glotzstdanalysis::SystemSnapshot
• setBox() : molesimAPI::IAPIBoundary , molesimAPI::IAPIPotential , glotzwrappers::GlotzillaBoundary , glotzwrappers::GlotzillaHarmonicBond , glotzwrappers::GlotzillaPotential , glotzwrappers::PotentialGroup
• SetBox() : glotzdatasources::RandomConfiguration , glotzmc::BoundaryConditions , glotzsimapi::BoundaryConditions
• SetBoxFormatSequence() : glotzmc::McWriteCenterOfMass , glotzmc::McWriteCoordinates
• SetCalculationType() : glotzdynanalysis::DisplacementAnalysis
• SetCamera() : glotzopengl::GlutWindow , glotzopengl::Window
• SetCellList() : glotzcluster::CenterParticleClusteringAlgorithm , glotzopt::PairList
• SetCellListId() : glotzopt::PositionedObject
• SetCenterObject() : glotzcluster::Cluster
• SetCheck() : glotzlammps::NeighModify
• setChildIndex() : molesimAPI::IAPIAtomTypeLeaf , glotzwrappers::GlotzillaAtomTypeLeaf
• SetCluster() : glotzcluster::ShapeDescriptor
• SetClusterCriterion() : glotzcluster::ClusteringAlgorithm , glotzdynanalysis::AveragedStructureSelfCorrelation , glotzdynanalysis::StructureSelfCorrelationAnalysis , glotzdynanalysis::StructureSelfCorrelationMatrix
• SetColor() : glotzcluster::NeighborMap , glotzopengl::GlObject
• SETCONFIG_NO_BC : glotzmd::Error
• SetConfiguration() : glotzmd::Simulation
• setConformation() : glotzwrappers::GlotzillaSpecies
• SetConvexComponentPtr() : glotzmc::PotentialRoutine
• SetCoordinateFormatSequence() : glotzmc::McWriteCenterOfMass , glotzmc::McWriteCoordinates
• SetCoordinates() : glotzmc::McTetrahedron
• SetCustom_Bit_Index() : GeneBit
• SetCustom_Bit_Value() : GeneBit
• setCutoff() : glotzwrappers::GlotzillaLJPotential , glotzwrappers::GlotzillaTwelveSixLjPotential , glotzwrappers::GlotzillaWCAPotential
• SetCutoff() : glotzcluster::StandardMatchingAlgorithm , glotzmc::HarrowellPotential , glotzmc::SoftPotential , glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential , glotzmc::YukawaPotential , glotzmc::SoftPotential , glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential , glotzmc::YukawaPotential , glotzmd::GeneralLjPotential , glotzmd::SoftPotential , glotzmd::TwelveSixLjPotential , glotzmd::WcaPotential
• SetCutoffRadius() : glotzcluster::MinDistanceClusterCriterion , glotzcluster::TypeDependentCutoffRadiusClusterCriterion , glotzdynanalysis::MinDistanceOverlapCriterion
• SetCycleLength() : glotzannealing::ThermalCycle
• SetDataIsVariable() : glotzmd::GlotzVisualizer
• SetDelay() : glotzlammps::NeighModify
• SetDelta() : glotzmc::McBeadPatch
• SetDensity() : glotzdatasources::Lattice
• SetDescriptor() : glotzsimapi::WriteObject
• setDiameter() : molesimAPI::IAPIAtomTypeSphere , glotzwrappers::GlotzillaAtomTypeSphere
• SetDimensions() : glotzdatasources::BoxStencil , glotzmc::McSimulation , glotzmc::TrialMove , glotzmc::McSimulation , glotzmc::TrialMove , glotzmd::Simulation
• setDimensions() : molesimAPI::IAPIBoundary , glotzwrappers::GlotzillaBoundary
• SetDirection() : glotzopengl::Trackball
• SetDumpArguments() : glotzlammps::Dump
• SetDumpFilename() : glotzlammps::Dump
• SetDumpGroupId() : glotzlammps::Dump
• SetDumpInterval() : glotzlammps::Dump
• SetDumpStyle() : glotzlammps::Dump
• SetEdgeLength() : glotzmc::McSmoothSymmetricTetrahedron
• SetEmpty() : glotzmc::Interval< T >
• SetEnd() : glotzmc::Interval< T >
• SetEndPoint() : glotzopengl::Line
• SetEnsemble() : pathsampling::Tps , glotztps::TpsModule< S, E > , pathsampling::Tps
• SetEnsembleIntensives() : glotzmc::McSimulation , glotzmc::Simulation , glotzmc::McSimulation , glotzsimapi::SimulationApi , ensembles::McNPTSimulation
• setEpsilon() : glotzwrappers::GlotzillaLJPotential , glotzwrappers::GlotzillaTwelveSixLjPotential
• SetEpsilon() : glotzmc::HarrowellPotential , glotzmc::SoftPotential , glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential , glotzmc::YukawaPotential , glotzmc::SoftPotential , glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential , glotzmc::YukawaPotential , glotzmd::GeneralLjPotential , glotzmd::SoftPotential , glotzmd::TwelveSixLjPotential
• SetEulerAngles() : glotzmc::McConvexComponent
• SetEvery() : glotzlammps::NeighModify
• SetExpiTetha() : glotzmc::McParticle
• SetExponentialFactor() : glotzannealing::SigmoidCycle
• SetEyeSeparation() : glotzopengl::Camera
• SetFeelsField() : glotzmc::McSmoothSymmetricTetrahedron
• SetFieldDirection() : glotzmc::McSmoothTetrahedralField , glotzmc::McTetrahedralField , glotzmc::McSmoothTetrahedralField , glotzmc::McTetrahedralField
• SetFieldStrength() : glotzmc::McField
• SetFileExtension() : glotzsimapi::Export
• SetFilePrefix() : glotzsimapi::Export
• SetFinalTemperature() : glotzannealing::StepCycle , glotzannealing::ThermalCycle
• SetFocalLength() : glotzopengl::Camera
• SetForce() : glotzmd::InteractingObject
• SetForceRoutine() : glotzmd::Simulation
• SetFrequency() : glotzcluster::FkCoefficientShapeDescriptor , glotzcluster::YlmCoefficientShapeDescriptor , glotzmc::McSimulationComponent , glotzmd::BerendsenThermostat , glotzmd::LangevinThermostat , glotzmd::RigidBodyUpdater , glotzmd::SimulationModifier , glotzsimapi::WriteObject , glotztps::TpsSimulationComponent
• SetFrictionCoefficient() : glotzmd::LangevinThermostat
• SetGenericFormatSequence() : glotzmc::McWriteCenterOfMass , glotzmc::McWriteCoordinates , glotzmc::McWriteDensity , glotzmc::McWritePotential , ensembles::McNPTWritePressure
• SetGeneValue() : GeneBit
• SetGreyscale() : glotzcluster::NeighborMap
• SetGroupId() : glotzopengl::GlObject
• SetHarmonicFrequency() : glotzcluster::FkCentroidShapeDescriptor , glotzcluster::YlmCentroidShapeDescriptor
• SetHasAllParticles() : glotzmc::McField , glotzmc::TrialMove , glotzmc::TrialVolumeChange , glotzmc::McField , glotzmc::TrialMove , glotzmc::TrialVolumeChange
• SetHeight() : glotzopengl::Camera , glotzopengl::GlutWindow , glotzopengl::Window
• SetIdleToCurrentWindow() : glotzopengl::GlutMaster
• SetImage() : glotzopengl::ImageRectangle
• SetIncidentEdge() : glotzmc::Vertex
• SetIncidentFace() : glotzmc::Edge
• SetIncrement() : glotzmath::Histogram< T >
• setIndex() : molesimAPI::IAPIAtomLeaf , molesimAPI::IAPIAtomType , molesimAPI::IAPIBox , molesimAPI::IAPIMolecule , molesimAPI::IAPISpecies , glotzwrappers::GlotzillaAtomLeaf , glotzwrappers::GlotzillaAtomType , glotzwrappers::GlotzillaBox , glotzwrappers::GlotzillaMolecule , glotzwrappers::GlotzillaSpecies , glotzwrappers::GlotzillaSpeciesSpheresMono , glotzwrappers::GlotzillaSpeciesSpheresPolymer
• SetInitialTemperature() : glotzannealing::StepCycle , glotzannealing::ThermalCycle
• SetIntegrationScheme() : glotzmd::Simulation
• SetInteractingTypes() : glotzmd::Potential
• SetInteraction() : glotzmc::CustomInteraction , glotzmc::McSimulation , glotzmc::PotentialRoutine , glotzmc::McSimulation , glotzmc::PotentialRoutine
• SetInteractionRange() : glotzopt::CellList , glotzopt::VerletList , glotzopt::VerletListWithCells
• SetInteractionShift() : glotzmd::InteractingObject
• setIntervalActionPriority() : molesimAPI::IAPIIntegrator , glotzwrappers::GlotzillaIntegrator
• SetIsAnisotropic() : glotzmc::TrialVolumeChange
• SetIsBoundaryCell() : glotzopt::Cell
• SetIsInverted() : glotzdatasources::Stencil , glotzdatasources::StencilUnion
• SetIsOverlapping() : glotzmc::McParticle
• SetIsPeriodic() : glotzopt::CellList , glotzopt::VerletList
• SetIsPeriodicX() : glotzdatasources::RandomConfiguration
• SetIsPeriodicXYZ() : glotzdatasources::RandomConfiguration
• SetIsPeriodicY() : glotzdatasources::RandomConfiguration
• SetIsPeriodicZ() : glotzdatasources::RandomConfiguration
• SetIsRotatable() : glotzmc::McParticle
• SetIsScalable() : glotzopengl::GlObject
• SetIsTranslatable() : glotzmc::McParticle
• SetIsVisible() : glotzopengl::GlObject
• SetK() : glotzcluster::FkCentroidShapeDescriptor , glotzcluster::FkCoefficientShapeDescriptor
• SetKappa() : glotzmc::YukawaPotential
• SetKeepRate() : glotzmd::VmdVisualizer
• SetKeyboard() : glotzopengl::GlutWindow , glotzopengl::Window
• SetL() : glotzcluster::YlmCentroidShapeDescriptor , glotzcluster::YlmCoefficientShapeDescriptor
• setLeafIndex() : molesimAPI::IAPIAtomLeaf , glotzwrappers::GlotzillaAtomLeaf
• SetLinearVelocity() : glotzmd::RigidBody
• SetListUpdateFrequency() : glotzmd::VerletForce , glotzmd::VerletForceMulti
• setListUpdateFrequency() : glotzwrappers::GlotzillaVerletCellForceMultiPotentialMaster , glotzwrappers::GlotzillaVerletCellForceMultiShiftedPotentialMaster , glotzwrappers::GlotzillaVerletCellForcePotentialMaster , glotzwrappers::GlotzillaVerletCellForceShiftedPotentialMaster , glotzwrappers::GlotzillaVerletForceMultiPotentialMaster , glotzwrappers::GlotzillaVerletForceMultiShiftedPotentialMaster , glotzwrappers::GlotzillaVerletForcePotentialMaster , glotzwrappers::GlotzillaVerletForceShiftedPotentialMaster
• SetLStep() : glotzcluster::YlInvariantShapeDescriptor
• SetMass() : glotzmc::MdBead , glotzmd::Bead , glotzmd::PointParticle
• SetMatchCoordination() : glotzcluster::StandardMatchingAlgorithm
• SetMax() : glotzopengl::Box
• SetMaximumAttempts() : glotzdatasources::RandomConfiguration
• SetMaximumMomentumChange() : pathsampling::MdTps , glotztps::ShootingMove
• SetMaximumShift() : glotztps::ShiftingMove , pathsampling::Tps
• SetMaximumTranslation() : glotzmc::McParticle
• SetMaxL() : glotzcluster::YlInvariantShapeDescriptor
• SetMaxStepSize() : glotzmc::TrialMove , glotzmc::TrialRotation , glotzmc::TrialTranslation , glotzmc::TrialVolumeChange , glotzmc::TrialMove , glotzmc::TrialRotation , glotzmc::TrialTranslation , glotzmc::TrialVolumeChange
• SetMaxTimeWindow() : glotzdynanalysis::DynamicsAnalysis
• SetMethod() : glotzcluster::StandardMatchingAlgorithm , glotzdynanalysis::AveragedStructureSelfCorrelation , glotzdynanalysis::OverlapParameterAnalysis , glotzdynanalysis::StructureSelfCorrelationAnalysis , glotzdynanalysis::StructureSelfCorrelationMatrix
• SetMin() : glotzopengl::Box
• SetMinimumCellSize() : glotzopt::CellList , glotzopt::VerletListWithCells
• SetMinimumSeparation() : glotzdatasources::RandomConfiguration
• SetMinL() : glotzcluster::YlInvariantShapeDescriptor
• SetMobilityCutoff() : glotzdynanalysis::MobileClusterAnalysis
• SetMouse() : glotzopengl::GlutWindow , glotzopengl::Window
• SetName() : glotzcluster::Cluster
• SetNeighborCriterion() : glotzopt::VerletList
• SetNeighborCutoff() : glotzdynanalysis::MobileClusterAnalysis
• SetNeighborStyle() : glotzopt::CellList
• SetNextEdge() : glotzmc::Edge
• setNMolecules() : molesimAPI::IAPIBox , glotzwrappers::GlotzillaBox
• SetNoInf() : glotzmc::Interval< T >
• SetNoSup() : glotzmc::Interval< T >
• SetNumberOfIterations() : glotzmd::LeapFrogIntegrator
• SetNumberOfPoints() : glotzdatasources::RandomConfiguration
• SetNumberOfRelaxationSteps() : pathsampling::Tps
• SetNumberOfSteps() : pathsampling::Tps
• SetObjects() : glotzopt::PairList , glotzopt::VerletList::Pair , glotzstdanalysis::SystemSnapshot
• SetOne() : glotzlammps::NeighModify
• SetOrigin() : glotzmc::Edge
• SetOuterComponent() : glotzmc::Face
• SetOutputInterval() : pathsampling::Tps , glotztps::TpsModule< S, E > , pathsampling::Tps
• SetOutputPath() : glotzmc::McStoreRestartData
• SetOverlapCriterion() : glotzdynanalysis::AveragedOverlapParameter , glotzdynanalysis::OverlapMatrix , glotzdynanalysis::OverlapParameterAnalysis
• SetOverlapCutoff() : glotzdynanalysis::AveragedOverlapParameter , glotzdynanalysis::OverlapMatrix , glotzdynanalysis::OverlapParameterAnalysis
• SetPage() : glotzlammps::NeighModify
• SetPairList() : glotzopt::PairList::Iterator
• setParent() : molesimAPI::IAPIAtomLeaf , glotzwrappers::GlotzillaAtomLeaf
• SetParent() : glotzopt::PositionedObject , glotzmd::RigidBody
• SetParentCellList() : glotzopt::Cell
• SetParentSimulation() : glotzmd::BaseObject
• SetParentWindow() : glotzopengl::GlotzGlBaseObject
• SetParticleIndex() : glotzmc::McField , glotzmc::TrialMove , glotzmc::TrialRotation , glotzmc::TrialTranslation , glotzmc::TrialVolumeChange , glotzmc::McField , glotzmc::TrialMove , glotzmc::TrialTranslation , glotzmc::TrialVolumeChange , glotzmc::TrialRotation
• SetParticlesAreHard() : glotzmc::McSimulation , glotzmc::TrialMove
• SetPatchyBeadPtr() : glotzmc::PotentialRoutine
• SetPath() : glotzsimapi::WriteData
• SetPathLength() : pathsampling::Tps , glotztps::TpsModule< S, E > , pathsampling::Tps
• SetPort() : glotzmd::VmdVisualizer
• SetPosition() : glotzdatasources::Stencil , glotzmc::ConvexComponent , glotzmc::McBeadPatch , glotzmc::ConvexComponent , glotzmc::McConvexComponent , glotzmc::McParticle , glotzmc::McPatchyBead , glotzmc::Vertex , glotzmc::McConvexComponent , glotzmc::McParticle , glotzmc::McPatchyBead , glotzmc::Vertex , glotzmd::Particle , glotzmd::PointParticle , glotzmd::Polymer , glotzmd::RigidBody , glotzmd::RigidParticle , glotzopengl::Box , glotzopengl::Cylinder , glotzopengl::Disk , glotzopengl::GlObject , glotzopengl::GlutWindow , glotzopengl::Text , glotzopengl::Window , glotzopt::PositionedObject
• setPosition() : glotzwrappers::GlotzillaAtomLeaf , glotzwrappers::GlotzillaPolymer
• SetPosition() : glotzmc::McPatchyBead
• setPosition() : glotzwrappers::GlotzillaAtomLeaf
• SetPosition() : glotzopengl::GlObject , glotzmd::RigidParticle , glotzmd::Polymer , glotzmc::McParticle , glotzmc::McConvexComponent , glotzmc::McBeadPatch , glotzmc::ConvexComponent
• setPositionDefinition() : glotzwrappers::GlotzillaSpecies
• SetPositionInBox() : glotzmd::Particle , glotzmd::Polymer , glotzmd::RigidBody , glotzmd::RigidParticle
• setPositionInBox() : glotzwrappers::GlotzillaPolymer
• SetPositionInBox() : glotzmd::PointParticle
• SetPositionX() : glotzopengl::GlutWindow , glotzopengl::Window
• SetPositionY() : glotzopengl::GlutWindow , glotzopengl::Window
• SetPotential() : glotzmc::BinaryMixtureInteraction , glotzmc::CustomInteractionNew , glotzmc::SingleComponentInteraction , glotzmc::BinaryMixtureInteraction
• SetPotentialEnergy() : glotzmd::InteractingObject
• SetPotentialFunction() : glotzmd::LookupTable< TABLE_SIZE >
• SetPotentialRoutine() : glotzmc::McSimulation , glotzmc::TrialMove
• setPower() : glotzwrappers::GlotzillaLJPotential
• SetPower() : glotzmd::GeneralLjPotential
• SetPressure() : glotzmc::TrialVolumeChange , ensembles::McNPTSimulation
• SetPreviousEdge() : glotzmc::Edge
• SetProjection() : glotzopengl::GlutWindow , glotzopengl::GlutWindow3d , glotzopengl::Window
• SetQuaternion() : glotzmc::McParticle , glotzmc::McTetrahedron , glotzmc::McParticle , glotzmc::McTetrahedron
• SetRadius() : glotzmc::Bead , glotzmd::Bead , glotzopengl::Cylinder , glotzopengl::Disk , glotzopengl::SphereBase , glotzsimapi::BeadApi , glotzmd::PointParticle
• SetRandomNumberGenerator() : glotzmc::McSimulation , glotzmc::TrialMove , glotzmc::McSimulation , glotzptempering::ParallelTempering , glotzptempering::ParallelTemperingMPI , glotzmc::TrialMove
• SetRandomNumberSeed() : pathsampling::Tps , glotztps::TpsModule< S, E >
• SetReferencePoint() : glotzmd::ParticleTracker
• SetReplacementCutoff() : glotzdynanalysis::StringAnalysis
• SetRestartFilename() : glotzlammps::Restart
• SetRestartInterval() : glotzlammps::Restart
• SetRigidBodyId() : glotzmd::InteractingObject
• SetRotation() : glotzopengl::GlObject , glotzopengl::Text
• SetRotationPoint() : glotzopengl::Camera
• SetScale() : glotzopengl::GlObject , glotzopengl::Disk , glotzopengl::Cylinder , glotzopengl::GlObject
• SetScreenHeight() : glotzopengl::Camera
• SetScreenWidth() : glotzopengl::Camera
• SetSeed() : glotzdatasources::RandomConfiguration , glotzmath::StdLibErand48
• SetSequencer() : glotzutil::Listable , glotzcluster::ClusterLibrary , glotzopt::Cell , glotzopengl::GlotzGlBaseObject
• SetShapeDescriptor() : glotzdynanalysis::StructureSelfCorrelationMatrix , glotzdynanalysis::StructureSelfCorrelationAnalysis , glotzcluster::StandardMatchingAlgorithm , glotzdynanalysis::AveragedStructureSelfCorrelation
• SetShiftsPerStep() : pathsampling::Tps
• SetShotsPerStep() : pathsampling::Tps
• SetSigma() : glotzmd::SoftPotential , glotzmd::TwelveSixLjPotential , glotzmc::YukawaPotential , glotzmd::GeneralLjPotential , glotzmc::HarrowellPotential
• setSigma() : glotzwrappers::GlotzillaLJPotential , glotzwrappers::GlotzillaWCAPotential
• SetSigma() : glotzmc::WcaPotential , glotzmc::TwelveSixLjPotential , glotzmc::YukawaPotential , glotzmd::WcaPotential
• setSigma() : glotzwrappers::GlotzillaTwelveSixLjPotential
• SetSigma() : glotzmc::TwelveSixLjPotential , glotzmc::WcaPotential
• SetSimulation() : glotzannealing::AnnealingModule , glotztps::TpsModule< S, E >
• SetSimulationsAdjacent() : glotzptempering::ParallelTempering , glotzptempering::ParallelTemperingMPI
• SetSize() : glotzopengl::GlutWindow , glotzopengl::Window
• setSkinThickness() : glotzwrappers::GlotzillaVerletForceShiftedPotentialMaster , glotzwrappers::GlotzillaVerletCellForceMultiPotentialMaster
• SetSkinThickness() : glotzopt::VerletListWithCells , glotzmd::VerletForce , glotzopt::VerletList
• setSkinThickness() : glotzwrappers::GlotzillaVerletCellForcePotentialMaster , glotzwrappers::GlotzillaVerletCellForceShiftedPotentialMaster , glotzwrappers::GlotzillaVerletForceMultiPotentialMaster , glotzwrappers::GlotzillaVerletForcePotentialMaster
• SetSkinThickness() : glotzmd::VerletForceMulti
• setSkinThickness() : glotzwrappers::GlotzillaVerletCellForceMultiShiftedPotentialMaster , glotzwrappers::GlotzillaVerletForceMultiShiftedPotentialMaster
• SetSnapshot() : glotzstdanalysis::RadialDistributionFunction
• setSpecies() : glotzwrappers::GlotzillaAtomTypeLeaf , molesimAPI::IAPIAtomTypeLeaf
• setSpringConstant() : glotzwrappers::GlotzillaHarmonicBond
• SetSpringConstant() : glotzmc::Spring , glotzsimapi::SpringApi , glotzmd::Spring
• SetStart() : glotzmc::Interval< T >
• SetStartPoint() : glotzopengl::Line
• SetStencil() : glotzdatasources::Lattice
• SetStepSizeUpdateFrequency() : glotzmc::TrialMove
• SetStream() : glotzutil::ArchiveWriter , glotzutil::ArchiveReader
• SetString() : glotzopengl::Text
• SetTableSize() : glotzmc::HybridInteraction
• SetTargetAcceptanceProbability() : glotzmc::TrialMove
• setTargetExtent() : glotzwrappers::GlotzillaHarmonicBond
• SetTargetExtent() : glotzsimapi::SpringApi , glotzmd::Spring , glotzmd::FeneSpring , glotzmc::Spring
• SetTau() : glotzmd::BerendsenThermostat
• SetTemperature() : glotzsimapi::Thermostat , glotzmc::McSimulation , glotzmc::TrialMove , glotzmc::McSimulation , glotzmc::TrialMove
• SetTextureSize() : glotzcluster::NeighborMap
• SetThermostat() : glotzannealing::AnnealingModule
• SetThickness() : glotzopengl::Line
• SetTime() : glotzstdanalysis::SystemSnapshot
• SetTimestep() : glotzmd::IntegrationScheme , glotzmd::EulerIntegrator , glotzmd::LeapFrogIntegrator
• setTimestep() : glotzwrappers::GlotzillaLeapFrogIntegrator , glotzwrappers::GlotzillaVelocityVerletIntegrator
• SetTimestep() : glotzmd::Simulation , glotzmd::VelocityVerletIntegrator
• setTimestep() : glotzwrappers::GlotzillaEulerIntegrator
• SetTimeWindow() : glotzdynanalysis::AveragedOverlapParameter , glotzdynanalysis::AveragedStructureSelfCorrelation , glotzdynanalysis::AveragedSquaredDisplacement
• SetTitle() : glotzopengl::GlutWindow , glotzopengl::Window
• SetTolerance() : glotzmc::ConvexComponent
• SetTrajectoriesAreDeterministic() : glotztps::ShootingMove , pathsampling::MdTps , glotztps::TpsModule< S, E >
• SetTrajectoriesAreStochastic() : pathsampling::MdTps , glotztps::ShootingMove , glotztps::TpsModule< S, E >
• SetTwinEdge() : glotzmc::Edge
• SetType() : glotzmc::Bead , glotzmd::RigidBody , glotzmd::RigidParticle , glotzmc::Bead , glotzmd::RigidParticle , glotzopt::PositionedObject , glotzmd::PointParticle
• SetUnits() : glotzmc::McSimulation , glotzmd::Simulation , glotzmc::McSimulation
• SetUseQ() : glotzcluster::YlInvariantShapeDescriptor
• SetUseW() : glotzcluster::YlInvariantShapeDescriptor
• SetVelocity() : glotzmd::InteractingObject
• setVelocity() : glotzwrappers::GlotzillaPolymer
• SetVelocity() : glotzmd::PointParticle , glotzmc::MdBead , glotzmd::Particle , glotzmd::Polymer , glotzmd::PointParticle , glotzmd::Polymer , glotzmd::InteractingObject , glotzmd::Particle
• setVelocity() : glotzwrappers::GlotzillaAtomKinetic
• SetVelocity() : glotzmd::RigidParticle , glotzmc::MdBead
• SetVelocityCouplingStrength() : pathsampling::MdTps , glotztps::ShootingMove
• SetViewDirection() : glotzopengl::Camera
• SetViewPosition() : glotzopengl::Camera
• SetViewPositionX() : glotzopengl::Camera
• SetViewPositionY() : glotzopengl::Camera
• SetViewPositionZ() : glotzopengl::Camera
• SetViewViewUp() : glotzopengl::Camera
• SetVirial() : glotzmd::InteractingObject
• SetWaitForConnection() : glotzmd::VmdVisualizer
• SetWidth() : glotzopengl::GlutWindow , glotzopengl::Window
• SetWindowID() : glotzopengl::GlutWindow
• setX() : molesimAPI::IAPIVector , glotzwrappers::GlotzillaVector3D
• SetZeroNetVelocity() : glotztps::ShootingMove , pathsampling::MdTps
• sGeneral : glotzmc::McConvexComponent
• sGlobalObjectSequencer : glotzopt::PositionedObject
• sGlobalSequencer : glotzmd::RigidBody , glotzmd::Spring
• ShapeDescriptor() : glotzcluster::ShapeDescriptor
• SHIFTED_NON_BEAD : glotzmd::Error
• ShiftingMove() : glotztps::ShiftingMove
• ShootingMove() : glotztps::ShootingMove
• Show() : glotzcluster::Cluster , glotzcluster::RealShapeDescriptor , glotzcluster::NeighborGlobe , glotzcluster::NeighborMap , glotzcluster::RealShapeDescriptor
• ShowHelp() : glotzmd::StandardCommandLine
• SIGMA : glotzmc::Potential
• SigmoidCycle() : glotzannealing::SigmoidCycle
• SimpleCubicLattice() : glotzdatasources::SimpleCubicLattice
• SimulatedAnnealing() : SimulatedAnnealing
• Simulation() : glotzmd::Simulation , glotzmc::Simulation , glotzlammps::Simulation , glotzmd::Simulation , glotzlammps::Simulation
• SimulationApi() : glotzsimapi::SimulationApi
• SIMULATIONCOMPONENT : glotzmc::McSimulation
• SimulationEventManager() : glotzmd::SimulationEventManager
• SimulationModifier() : glotzmd::SimulationModifier
• SINGLE_COMPONENT : glotzmc::Interaction
• SingleComponentInteraction() : glotzmc::SingleComponentInteraction
• SixRingTnp() : glotzparticles::SixRingTnp
• Size() : glotzcluster::ClusterLibrary , glotzmc::McParticle , glotzmd::PointParticle , glotzmc::OldCell< bead_t, convex_t, patchybead_t > , glotzmath::Vector< TYPE, SIZE > , glotzmd::LookupTable< TABLE_SIZE >
• size() : glotzmath::Vector< TYPE, SIZE >
• Size() : glotzopt::VerletList , glotzmc::McParticle , glotzmath::Matrix< TYPE, ROWS, COLS > , glotzmd::RigidParticle , glotzmath::MapHistogram< T1, T2 > , glotzmc::OldCell< bead_t, convex_t, patchybead_t >
• size() : glotzmath::Matrix< TYPE, ROWS, COLS >
• Size() : glotzmath::Histogram< T > , glotzmd::RigidBody , glotzmath::StatisticsTool< TYPE > , glotzmd::Polymer , glotzmd::Particle , glotzmc::OldCellList< bead_t, convex_t, patchybead_t >
• SlaveRun() : RandomRestart_MPI , GeneticAlgorithm_MPI , HillClimb_MPI
• SlaveRunToLocalMax() : RandomRestart_MPI
• SMOOTH_TETRAHEDRAL : glotzmc::McField
• sObjectFactory : glotzutil::Serializable
• SOFT : glotzmc::Potential
• SoftInteraction() : glotzmc::SoftInteraction
• SOFTPARTICLES : glotzmc::McSimulation
• SoftPotential() : glotzmc::SoftPotential , glotzmd::SoftPotential , glotzmc::SoftPotential , glotzmd::SoftPotential
• SolidBox() : glotzopengl::SolidBox
• sParallelepiped : glotzmc::McConvexComponent
• species : glotzwrappers::GlotzillaAtomTypeLeaf
• speciesList : glotzwrappers::GlotzillaSpeciesManager
• speciesManager : glotzwrappers::GlotzillaSimulation
• SpecifyConvexComponent() : glotzmc::McPointConvexParticle
• SpecifySurroundingNormals() : glotzmc::ConvexComponent
• Sphere() : glotzopengl::Sphere
• SphereBase() : glotzopengl::SphereBase
• Spin() : glotzmd::RigidParticle
• Splice() : GeneBit
• Spring() : glotzmd::Spring , glotzmc::Spring , glotzmd::Spring
• SpringApi() : glotzsimapi::SpringApi
• SQAREWELL : glotzmc::Interaction
• SQUARE_WELL : glotzmc::Potential
• squared() : molesimAPI::IAPIVector , glotzwrappers::GlotzillaVector3D
• SquaredDistanceBetween : glotzmath::Vector< TYPE, SIZE >
• SquareWellPotential() : glotzmc::SquareWellPotential
• sRectangularCube : glotzmc::McConvexComponent
• sRestartMap : glotzmath::RandomNumberGenerator , glotzsimapi::Units
• sSequencer : glotzcluster::ClusterLibrary , glotzutil::Listable , glotzmc::McParticle , glotzopengl::GlotzGlBaseObject , glotzopengl::Window
• sSymmetricTetrahedron : glotzmc::McConvexComponent
• StandardClusterLibrary() : glotzcluster::StandardClusterLibrary
• StandardCommandLine() : glotzmd::StandardCommandLine
• StandardMatchingAlgorithm() : glotzcluster::StandardMatchingAlgorithm
• Start() : glotzmc::Timer , glotzopengl::Trackball , glotzutil::StopWatch , glotzmc::Interval< T > , glotzmc::Timer , glotzmd::FluctuationMetric , glotzmc::Interval< T >
• StartIdling() : glotzopengl::GlutWindow
• StartMainLoop() : glotzopengl::GlutWindow
• StartTracking() : glotzmd::ParticleTracker
• StaticHistogram() : glotzmath::StaticHistogram< T, NBINS >
• Statistic() : glotzmath::Statistic
• StatisticsTool() : glotzmath::StatisticsTool< TYPE >
• StDev() : glotzmath::StatisticsTool< TYPE >
• STDLIBERAND48 : glotzmath::RandomNumberGenerator
• StdLibErand48() : glotzmath::StdLibErand48
• Steepest_Ascent() : HillClimb
• Stencil() : glotzdatasources::Stencil
• StencilUnion() : glotzdatasources::StencilUnion
• STEP_SIZE : glotzmc::TrialMove
• StepBackward() : glotzmd::Simulation , glotzmc::Simulation , glotzsimapi::SimulationApi , glotzlammps::Simulation
• stepCount : glotzwrappers::GlotzillaIntegrator
• StepCycle() : glotzannealing::StepCycle
• StepForward() : glotzmd::Simulation , glotzsimapi::SimulationApi , glotztps::TpsModule< S, E > , glotzptempering::ParallelTemperingMPI , glotzmc::Simulation , glotzlammps::Simulation , glotzptempering::ParallelTempering
• sTetrahedron : glotzmc::McConvexComponent
• Stochastic_Hill_Climb() : HillClimb
• StochasticUniversalSampling() : GeneticAlgorithm
• Stop() : glotzmc::Timer , glotzmd::FluctuationMetric , glotzutil::StopWatch , glotzmc::Timer
• StopTracking() : glotzmd::ParticleTracker
• StopWatch() : glotzutil::StopWatch
• STORE_RESTART_DATA : glotzmc::McSimulationComponent
• STRENGTH : glotzmc::McField
• StringAnalysis() : glotzdynanalysis::StringAnalysis
• StructureSelfCorrelationAnalysis() : glotzdynanalysis::StructureSelfCorrelationAnalysis
• StructureSelfCorrelationMatrix() : glotzdynanalysis::StructureSelfCorrelationMatrix
• Sum() : glotzmath::StatisticsTool< TYPE >
• SumAcross() : glotzmath::Vector< TYPE, SIZE >
• SumForceAndTorque() : glotzmd::RigidBody
• SumOver() : glotzmath::Matrix< TYPE, ROWS, COLS >
• SumOverGhosts() : glotzmc::MdBead
• Sup() : glotzmc::Interval< T >
• SurroundingNormalsSpecified() : glotzmc::ConvexComponent
• SyncWithSimulation() : glotzmd::ParticleTracker
• SystemSnapshot() : glotzstdanalysis::SystemSnapshot

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